ok-gitr / genesetvis

gene-set enrichment visualization.

geneSetVis

geneSetVis is a shiny app for the vizualization of enrichment analysis of sets of genes.

Available:

devtools::install_github("kolabx/geneSetVis@pkg", dependencies = T, upgrade = "always")

#lauch app
geneSetVis::launchGeneSetVis()

Shiny

Docker docker pull bimberlabinternal/shiny

genesetvis's Issues

geneSetVis Bugs

hi @kolabx , i noticed a couple things when using geneSetViz:

• if you enter just a list of genes into the 'load data' tab, but you have selected the 'genes + fc' toggle, you get a 'disconnected from server' message. i assume something crashes. there should be some kind of sanity-checking on the user's data and it should report a warning instead

• i dont recall if this was already fixed, but when there's no mapped genes the MSigDB tab reports 'error: cannot open Rplots.pdf' when you hit 'run'.

• likewise, DAVID reports 'input should be an enrichedResult or gseaResult object...', which i think also indicates there are no hits. this probably needs some kind of error checking further upstream.