o2r-project / dockerfiles

Dockerfiles for base images for executable research containers

dockerfiles

Dockerfiles for base images for executable research containers (ERC) and for use in the o2r microservice architecture.

geospatial-ctv

This image comes in three layers, each extending the previous one by installing a full CRAN Task View.

• o2rproject/geospatial-ctv:spatial has Spatial
• o2rproject/geospatial-ctv:spatiotemporal also has SpatioTemporal
• o2rproject/geospatial-ctv:spatiotemporal-timeseries also has TimeSeries

spatial

Based on the image rocker/geospatial.

spatiotemporal

Currently missing packages which could not be installed from the task view:

• rpanel ([tcl] can't find package BWidget.)
• lgcp (depends on rpanel)
• tkrplot (tcltkimg.c:2:16: fatal error: tk.h: No such file or directory)
• RPyGeo (package ‘RPyGeo’ is not available (for R version 3.4.0))
• rJava (error: Java interpreter '/usr/bin/java' does not work)
• adehabitat (depends on tkrplot)
• spcosa (depends on rJava)
• OpenStreetMap (depends on rJava)
• spatsurv (depends on OpenStreetMap)

spatiotemporal-timeseries

Currently missing packages which could not be installed from the task view:

• rpanel ([tcl] can't find package BWidget.)
• RGtk2 (configure: error: GTK version 2.8.0 required)
• cairoDevice (ERROR: gtk+2.0 not found by pkg-config.)
• SDD (depends on rpanel)
• x12GUI (depends on RGtk2, cairoDevice)

geospatial-containerit

Extending the image geospatial-ctv:spatiotemporal-timeseries with containerit to have a good image while running submitted workspaces in o2r-loader.