nvnieuwk / nf-samplesheet-conversion Goto Github PK
View Code? Open in Web Editor NEWA script to validate a samplesheet and convert it to a Nextflow channel.
License: MIT License
A script to validate a samplesheet and convert it to a Nextflow channel.
License: MIT License
e.g. no-duplicate lane IDs within a single sample name
Add a section to the schema which defines which fields are dependent on other fields.
Used in nf-core/genomeassembler
: https://github.com/nf-core/taxprofiler/blob/donotdelete-pep-backup/subworkflows/local/input_check.nf
The files fetched from the samplesheet are of class java.io.File
instead of sun.nio.fs.UnixPath
. Modules are unable to use file of the current class
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