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quickstart-illumina-dragen

AWS Quick Start Team

r-bioinformatics-cookbook

R Bioinformatics Cookbook, published by Packt

r-charts

This is the official repository of the R CHARTS site

r-for-data-science-lunchbreak-lessons

Source files for the LinkedIn Learning Course

react_step_form

Multi step form built with React and Material UI

readme

real_world_python

Code and supporting files for book Real World Python

reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

repeatcatalogs

reportlabbookcode

Code examples for the book, ReportLab: PDF Processing with Python

reviewer

A tool for visualizing alignments of reads in regions containing tandem repeats

ripgrep

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

rmarkdown-book

R Markdown: The Definitive Guide (published by Chapman & Hall/CRC in July 2018)

rnaseq-nf

A proof of concept of RNAseq pipeline

running_process_in_parallel

Running a process in parallel

samplot

Plot structural variant signals from many BAMs and CRAMs

sars-cov-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scikit-allel

A Python package for exploring and analysing genetic variation data

scopulariopsis_brevicaulis

scrna-seq_online

scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

scrnatools-paper

A review of tools for analysing single-cell RNA-seq data

seaborn_example_by_examples

Explore seaborn - example by examples

searching-for-latent-viruses-in-human-whole-genome-sequencing-data

Students: Yura Orlov, Nadya Pogodina, Alisa Morshneva Supervisors: Valery Ilinsky, Alexander Rakitko (Genotek, Moscow) Bioinformatics Institute, Saint-Petersburg, 2019

senaite.lims

SENAITE Meta Package

sentieon-dnaseq

Sentieon DNAseq

seq2hla

In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.

seqprocess

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package

seqr

web-based analysis tool for rare disease genomics