Comments (1)
This is because the iGenomes config is not up-to-date. The genome configuration which is used in the test_full
example is not containing a gtf
file for the configured genome R64-1-1
. However, the version of the iGenomes configuration that is used in the rnaSeq-Pipeline contains the necessary files.
I will update the iGenomes file and open a PR.
from circrna.
Related Issues (20)
- Problem with star 2nd pass, Process exceeded running time limit - CIRCexplorer2 HOT 4
- ERROR ~ Argument of `file` function cannot be null HOT 5
- Fatal INPUT FILE error, no valid exon lines in the GTF file: genes.gtf when using --genome GRCh38 HOT 1
- Deprecated mapsplice docker image: quay.io/biocontainers/mapsplice:2.2.1--py27h07887db_0 HOT 1
- Implement JCcirc
- Implement CIRI-full
- Implement circRNAfull
- Implement psirc for isoform detection
- Implement miRNA sponging analysis
- Implement circRNA database annotation functionalities HOT 1
- Implement circbase HOT 1
- Implement circatlas HOT 1
- Implement circbank HOT 1
- Implement circRNADisease HOT 1
- Implement polyA-Benchmarking
- Decide how to proceed with the differential expression subworkflow
- Deprecate the `module` parameter
- Add `psirc quant` output to MulitQC via `kallisto` module
- Problems with empty annotation intersection HOT 12
- GTF entries on sequence which is not present in FASTA HOT 11
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