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View Code? Open in Web Editor NEWa web-based R shiny application that wraps DESeq2 R package
Home Page: http://nasqar.abudhabi.nyu.edu/deseq2shiny/
a web-based R shiny application that wraps DESeq2 R package
Home Page: http://nasqar.abudhabi.nyu.edu/deseq2shiny/
Hi,
The input file keeps uploading without any further step in the app.
How to circumvent this? It shows no error either.
Kindly help.
Hi,
I performed DGE analysis using example datasets ([dataset] 2016) according to the instructions of Supplementary Materials of your BMC Bioinfo paper.
However, at the step of "Run DESeq2", I got the following error message and could not complete the analysis:
"DESeq2 Error: attempt to select less than one element in OneIndex"
How to circumvent this?
Hello,
First, great work on this app. I ran two different data sets (one mouse, one bacterial) and in both cases the DE analysis outputs some values for some genes as " ****************". For example a log2foldchange value for one gene might be that long string of asterisks while all other values for the gene are expected number values. Then a different gene may have an adj p value of '****************e-08' or while other values outputted for that gene are reasonable expected values. I tried to look this up in the DESeq2 manual to see if it is meaningful but it doesn't seem like this is standard output? These data are also not viewable within the shiny app and must be downloaded as .csv. I also tried viewing the .csv vs through the head command in linux to be sure it was a text viewer issue.
Any thoughts on preventing this or a way to see the actual value of these numbers? Thanks!
Hi,
I've the message "diconnected from the server" when I import my file, can you help me please ?
data-2022-02-13 (1).csv
Thanks
Nicolas
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