mulxcode / itpc

Code for processing data collected by the International Tamoxifen Pharmacogenomics Consortium

ITPC Data Parser

This project contains code for processing data collected by the International Tamoxifen Pharmacogenomics Consortium.

The consortium's site can be found at the PharmGKB website.

This project was written and is maintained using the IntelliJ IDEA 9 IDE.

Building and Running

To build the code

1. Update build.properties to point to your JDK 1.6 home
2. Build the ItpcParser.jar file by running: ant makeJar (it will be in the out directory)
3. To run the parser execute: java -jar ItpcParser.jar -f /path/to/itpc.xls

To get a full list of command line parameters use the command java -jar ItpcParser.jar -h

About the Code

This project was written in the JDK 1.6.0 Update 20

The supporting library versions are listed below:

• commons-cli.jar :: Apache Commons CLI 2.0
• commons-io.jar :: Apache Commons I/O 1.4
• commons-lang.jar :: Apache Commons Lang 2.4
• log4j.jar :: Log4J 1.2.15
• poi-ooxml.jar, poi.jar :: Apache POI 3.6

Contact

For questions and requests, please contact Ryan Whaley.