mu-biomed / retimat

Retinal image analysis in MATLAB

RETIMAT: Retinal image analysis in MATLAB

A MATLAB Toolbox for retinal OCT image analysis.

What can I do with RETIMAT?

• Read OCT files: .vol, .e2e, .img, .fda, .xml (OCT Explorer)
• Visualization
  • Raw images (OCT, fundus) + en-face maps (thickness, reflectance)
  • Summary reports
• Feature extraction
  • Image quality and reflectance
  • Thickness (ETDRS and other sectorizations)
  • Foveal pit shape (slope, radius...)
  • Texture (GLCM, LBP, fractal dimension...)

How to get started

1. Clone the repository
   • Click on the green Code button
   • Select Download Zip
2. Run startup.m to add RETIMAT to the MATLAB path
3. Take a look into the tutorials

Contact

For help, feedback or collaboration inquiries please contact [email protected]

retimat's Issues

Adapt oct file readers for fds and fda formats

There is a python implementation here.

It shouldn't be hard to adapt it to Matlab.

Potential for compiled matlab version

Hi David,

Great to see this package to come together, I'm thinking I may use it to replace an old, hacky toolkit that I'd made previously for similar applications (OCT_scripts). However, I don't currently have access to a matlab instance / license. Is there a way to produce a compiled version so that the retimat toolkit can be used without a specific matlab instance? Using compiled versions of toolkits / code is how brainlife addressed this same issue with running matlab code in docker containers.