Comments (3)
Full Cleavage is now implemented.
However, there is still no option to export to ONE file
from protgraph.
Via 289f535 it is now possible to use the export functionality of ProtGraph in conjunction with a fasta generation file to generate 1 FASTA-File.
Keep in mind that this approach is not well optimized and can take a lot of time to retrieve.
from protgraph.
Enhancement: Create another writing Thread in Main, which is solely responsible for exporting lines into a SINGLE file
E.G: Export ("out.fasta', '<Entry 1>, ' ) (tuple (str, str))
This could be done with minimal effort, by adding another parameter into the export functions (another queue)
from protgraph.
Related Issues (20)
- Add New Feature: MUTAGEN
- Update Readme with new available Options and changing CLI
- Protein Q9R1E6 generates parallel edges, how do we want to handle parallel edges? HOT 2
- Cannot parse Isoform Mutagens and Conflicts for specific Proteins HOT 3
- Enhance Dyn Programming and Top Order and include other interesting statistics HOT 1
- Pep Export depending on mass HOT 1
- Potential Bottlenecks in ProtGraph
- Protgraph PR 0.30 consumes to much RAM HOT 1
- Dependency apsw is not provided in PyPI HOT 2
- Reimplementing (Refactoring) of Signal Peptides
- Outsource Parsing into Processes
- Error of reading SP-EMBL files via Windows HOT 1
- Include Feature CHAIN
- Conda channel priority problems
- ProtGraph might not generate files while called through Python HOT 1
- Extend VC-Count in BPCSR Output to also consider not only VARIANTs but user-chosen Features
- Updating PTMs HOT 1
- PEPTIDE and PROPEP (CHAIN, maybe even SIGNAL-peptides) may have an unique identifier
- FASTA-Exporter also exports spaces in the Headers. We should remove them
- Generted FASTAs contain OR[|None] Entries, which contain no information
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from protgraph.