Comments (1)
Implemented Counting on specific features, which may be usefull. Currently supports counting Mutagen, Conflict and Variant, could be extended to other features as well.
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Related Issues (20)
- Add New Feature: MUTAGEN
- Update Readme with new available Options and changing CLI
- Protein Q9R1E6 generates parallel edges, how do we want to handle parallel edges? HOT 2
- Cannot parse Isoform Mutagens and Conflicts for specific Proteins HOT 3
- Pep Export depending on mass HOT 1
- Potential Bottlenecks in ProtGraph
- Protgraph PR 0.30 consumes to much RAM HOT 1
- Dependency apsw is not provided in PyPI HOT 2
- Reimplementing (Refactoring) of Signal Peptides
- Outsource Parsing into Processes
- Error of reading SP-EMBL files via Windows HOT 1
- Include Feature CHAIN
- Conda channel priority problems
- ProtGraph might not generate files while called through Python HOT 1
- Extend VC-Count in BPCSR Output to also consider not only VARIANTs but user-chosen Features
- Updating PTMs HOT 1
- PEPTIDE and PROPEP (CHAIN, maybe even SIGNAL-peptides) may have an unique identifier
- FASTA-Exporter also exports spaces in the Headers. We should remove them
- Generted FASTAs contain OR[|None] Entries, which contain no information
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