Hi, everyone
After compiling the MPAS init_atmosphere and atmosphere cores, i try to run example 'supercell'.
make a new directory
mkdir supercell
down load the package
wget http://www2.mmm.ucar.edu/projects/mpas/test_cases/v5.1/supercell.tar.gz tar zxvf supercell.tar.gz cd supercell
link to init_atmosphere_model
ln -s $MPAS/MPAS-Model/init_atmosphere_model
process the static field
./init_atmosphere_model
and get an error
Segmentation fault(core dumped)
file log.init_atmosphere.0000.out
writes
Beginning MPAS-init_atmosphere Output Log File for task 0 of 1
Opened at 2018/10/21 18:32:34
Using default double-precision reals
Reading namelist from file namelist.init_atmosphere
*** Encountered an issue while attempting to read namelist record data_sources
The following values will be used for variables in this record:
config_geog_data_path = /glade/p/work/wrfhelp/WPS_GEOG/
config_met_prefix = CFSR
config_sfc_prefix = SST
config_fg_interval = 86400
config_landuse_data = USGS
config_topo_data = GTOPO30
config_use_spechumd = F
*** Encountered an issue while attempting to read namelist record vertical_grid
The following values will be used for variables in this record:
config_ztop = 30000.0000000000
config_nsmterrain = 1
config_smooth_surfaces = T
config_dzmin = 0.300000000000000
config_nsm = 30
config_tc_vertical_grid = T
*** Encountered an issue while attempting to read namelist record interpolation_control
The following values will be used for variables in this record:
config_extrap_airtemp = linear
*** Encountered an issue while attempting to read namelist record preproc_stages
The following values will be used for variables in this record:
config_static_interp = T
config_native_gwd_static = T
config_gwd_cell_scaling = 1.00000000000000
config_vertical_grid = T
config_met_interp = T
config_input_sst = F
config_frac_seaice = T
*** Encountered an issue while attempting to read namelist record io
The following values will be used for variables in this record:
config_pio_num_iotasks = 0
config_pio_stride = 1
*** Encountered an issue while attempting to read namelist record decomposition
The following values will be used for variables in this record:
config_block_decomp_file_prefix = x1.40962.graph.info.part.
config_number_of_blocks = 0
config_explicit_proc_decomp = F
config_proc_decomp_file_prefix = graph.info.part.
Reading streams configuration from file streams.init_atmosphere
Found mesh stream with filename template supercell_grid.nc
Using default io_type for mesh stream
** Attempting to bootstrap MPAS framework using stream: input
Bootstrapping framework with mesh fields from input file 'supercell_grid.nc'
WARNING: Attribute file_id not found in supercell_grid.nc
WARNING: Using '' for the previous file_id.
WARNING: Attribute parent_id not found in supercell_grid.nc
WARNING: Setting parent_id to ''
WARNING: Attribute mesh_spec not found in supercell_grid.nc
WARNING: Setting mesh_spec to '0.0'
WARNING: is_periodic attribute not found in supercell_grid.nc
WARNING: Setting is_periodic to .false.
Parsing run-time I/O configuration from streams.init_atmosphere ...
----- found immutable stream "input" in streams.init_atmosphere -----
filename template: supercell_grid.nc
filename interval: none
direction: input
reference time: initial_time
record interval: -
input alarm: initial_only
----- found immutable stream "output" in streams.init_atmosphere -----
filename template: supercell_init.nc
filename interval: none
direction: output
reference time: initial_time
record interval: -
output alarm: initial_only
package: initial_conds
----- found immutable stream "surface" in streams.init_atmosphere -----
filename template: not_needed_for_supercell
filename interval: none
direction: output
reference time: initial_time
record interval: -
output alarm: 86400
package: sfc_update
----- done parsing run-time I/O from streams.init_atmosphere -----
** Validating streams
Reading dimensions from input streams ...
----- reading dimensions from stream 'input' using file supercell_grid.nc
nCells = 28080
nEdges = 84240
nVertices = 56160
TWO = 2
maxEdges = 6
maxEdges2 = 12
vertexDegree = 3
----- done reading dimensions from input streams -----
Processing decomposed dimensions ...
----- done processing decomposed dimensions -----
Assigning remaining dimensions from definitions in Registry.xml ...
THREE = 3
FIFTEEN = 15
TWENTYONE = 21
R3 = 3
nVertLevels = 40 (config_nvertlevels)
nSoilLevels = 4 (config_nsoillevels)
nFGLevels = 38 (config_nfglevels)
nFGSoilLevels = 4 (config_nfgsoillevels)
nVertLevelsP1 = 41
nMonths = 12 (config_months)
----- done assigning dimensions from Registry.xml -----
and gdb the core says
#0 0x000055963e735c8e in box_rearrange_create ()
How could i process a static field?