modelengineering Goto Github PK
Name: Model Engineering
Type: Organization
Bio: Tools to improve productivity of kinetics modeling of biological systems.
Model Engineering's Projects
advancing-biomedical-models
Topics course on tools for kinetics modeling
bioen-437
controlsbml
Analyze and design feedback control for SBML models
dash
Exploring the use of dash as a front end for Biosimulations
explorersb
Explore models in systems biology
fitterpp
Extended fitter for fitting parameters.
km_unit
Unit testing for kinetics models
memote
memote – the genome-scale metabolic model test suite
model-testing
modelanalysis
Analysis of kinetics models
oscillators
Investigation of oscillations in reaction networks
sbdoe
Tool for designing and running computational experiments in systems biology.
sbmlkinetics
Repository of tests to validate kinetics expressions in SBML models.
sbmllint
Model checker for SBML compliant models.
sbmllintsave
Saved folders from SBMLLint
sbmlmodel
Infrastructure for doing analysis using the python package Tellurium for simulations in Systems Biology
sirn
Structurally identical reaction networks
smart-antimony-vscode
A smart editor and recommender interface for VScode
smarte
Smart Parameter Estimation in Reaction Networks
templatesb
Template preprocessor for kinetics models.
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