mkyriak Goto Github PK
Name: Maria Kyriakidou
Type: User
Name: Maria Kyriakidou
Type: User
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
Tools for working with agp files
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon.
Fast and accurate gene fusion detection from RNA-Seq data
📚 A curated list of awesome programming books (Algorithms and data structures, Artificial intelligence, Software Architecture, Human–computer interaction, Operating Systems, Database Systems, IT Security, Concurrency, Interpreters and Compilers, High-Performance Computing, Distributed Systems, Game Development, Mathematical optimization)
Bioinformatics Workbook repository
Documenting usage and experience with bioinformatic tools
Tutorial Notebooks of BioJulia
alternative splicing analysis pipeline
The next version of bwa-mem
A single molecule sequence assembler for genomes large and small.
Causal Variant Evidence Mapping with Non-parametric resampling
Evaluate quality, model fit, QV calibration and all else CCS
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
ChIP-seq analysis notes from Ming Tang
An R package for predicting HR deficiency from mutation contexts
A reference-assisted assembly tool for producing draft chromosome sequences.
Python pipeline for neuroimaging data
Visualise copy-number alterations and structural variants
Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
CoSSA (Prodhomme et al., 2019) is a set of workflows used to identify quickly and efficiently haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data. All the contributors to the design of these workflows are Danny Esselink, Charlotte Prodhomme and Theo Borm (Wageningen University UR Plant Breeding).
Plan your day, and visually see how you spend your time.
fork CrossMap
Tools to process and analyze deep sequencing data.
DNA sequencing analysis notes from Ming Tang
dysgu-SV is a collection of tools for calling structural variants using short or long reads
hands-on for NGS/SNParray CNV call trainning
RStudio add-in to make plots with ggplot2
DNA foundation modeling from molecular to genome scale
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.