mims-harvard / crank Goto Github PK

Hi Marinka,

My name is Jordi, and I'm using CRank to priorize my clusters obtained from Intact database, a Protein Protein Interaction database. I use a new tool called MONET to cluster the genes from Intact database. However this tool not provides node-community affiliation probabilities (-in) and edge probabilities conditioned on nodes' affiliations with communities (-ic:). I obtained the edge probabilities (-ie) from Intact database. I understand that -in and -ic should be obtained after clustering step, but in my case I cannot obtain those probabilities. For this reason, I will appreciate to mention me which tool I could use in order to obtain those probabilities and finally improve my clustering priorization.

Thanks for your time

Jordi