milescsmith / scrnaimputer

A effort to collect all of the scRNA imputation methods and allow them to interface with scRNA-seq libraries (i. e. Seurat, SingleCellAssay, etc...)

scRNAimputeR

A effort to collect all of the scRNA imputation methods and allow them to interface with scRNA-seq libraries (i. e. Seurat, SingleCellAssay, etc...)

Currently, only the following work:

• ALRA, though you can find this as an installable R package here
• AutoImpute, though like above, you can find an installable Python package here
• DCA
• MAGIC
• scImpute though you will need the version here

The following are others I'm aware of and planning to include:

• scvi
• DECODE
• DrImpute
• netSmooth
• BISCUIT
• SAVER
• scUnif
• CIDR
• SAUCIE