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cncdriver

Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

code_request

General R functions and scripts for publications

cola

A General Framework for Consensus Partitioning

compositedriver

Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers

computational-biology-conferences

curated list of computational biology conferences

computational-biology-postdoc-fellowship

collections of computational biology postdoc fellowship

consensustme

ConsensusTME Gene Sets and R Script

coregistration

Use Jupyter Notebook "coregistration pipeline no imzml.ipynb" from the repository below to co-register your MALDI MSI and fluorescent microscopy images! Use ion_maker.py to produce ion images from your imzML files. More in the readme below!

cosmos

cpi1000_paper

crispr_dart

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

data.table.examples

datasciencecoursera

data science

datasharing

The Leek group guide to data sharing

deep-learning-summer-schools

collection of deep learning summer schools

deepdrim

demo-pipeline

depmap-analysis

This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"

developer-roadmap

Roadmap to becoming a web developer in 2020

drugrepurposing

R scripts to extract details from drugbank.ca detailed drug XML database

dsmo.course

Data Science and Matrix Optimization course

edmot

An implementation of "EdMot: An Edge Enhancement Approach for Motif-aware Community Detection" (KDD 2019)

emliu

Academic website of Eric Minwei Liu

fba-pipeline

Pipeline for the generation and simulation of personalized Flux Balance Analysis models

fidel

R library - A binary classifier based on the class probability at a given rank following Fermi-Dirac distribution

findpeaks

A simple algorithm to find local maxima/minima in sequential data

forge

This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details

friedrich-et-al-idh1wt-mut-micr

genoppi

Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data