The minimal-metab from microbiomedata

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License: MIT License

Makefile 37.03% HTML 2.03% JavaScript 3.27% CSS 4.32% Python 52.53% Shell 0.83%

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owl and shacl generation: AttributeError: 'str' object has no attribute 'decode'

gen-project: $(PYMODEL)
	$(RUN) gen-project ${GEN_PARGS} \
		--exclude owl \
		--exclude shacl \
		-d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)

Traceback (most recent call last):
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/bin/gen-project", line 8, in
sys.exit(cli())
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/linkml/generators/projectgen.py", line 260, in cli
gen.generate(yamlfile, project_config)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/linkml/generators/projectgen.py", line 158, in generate
gen_dump = gen.serialize(**serialize_args)
File "/home/mark/.cache/pypoetry/virtualenvs/minimal-metab--2GObgSZ-py3.9/lib/python3.9/site-packages/linkml/generators/shaclgen.py", line 41, in serialize
data = g.serialize(
AttributeError: 'str' object has no attribute 'decode'

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