metagenome-atlas / atlas2anvio Goto Github PK
View Code? Open in Web Editor NEWHand output of Atlas to Anvio
License: MIT License
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Anvio profiles disappear after scrip has finished
When I run this scripts on my data it made the contig db, the profiles but at the end all profile db were disappeared.
segfault
W::hts_idx_load2] The index file is older than the data file: genomes/alignments/S003.bam.bai
/bin/bash: line 2: 58131 Segmentation fault anvi-profile -i genomes/alignments/S003.bam -c genomes/anvio/all_contigs.db -T 1 --output-dir genomes/anvio/sample_profiles/S003 -S S003 --skip-SNV-profiling
```
I get this segfault even with mem =250G
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