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RNA与Chip-seq联合分析Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
10xGenomic单细胞转录组cnv Inferring CNV from Single-Cell RNA-Seq
细菌的RNA之间的相互作用Efficient target prediction incorporating accessibility of interaction sites
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
三代转录组的可视化工具
cell-cell communication之前通信,主要是与肿瘤相关
单细胞数据处理工具,可以考虑多重比对,最大似然法进行reads分配kallisto | bustools workflow for pre-processing single-cell RNA-seq data
比较好看的基因在染色体上面的图karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
单细胞转录组批次校正技术An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Repository for scRNAseq study of human kidneys
Single cell RNA-seq analysis accompanying Kortekaas, Santegoets et al. 10.1158/2326-6066.CIR-20-0270 doi: (2020)
药物与基因表达数据库Large-scale visualization of drug-induced transcriptomic signatures
L1Procs is a parallel R package for L1000 data processing and analyzing. Major function of L1KProcs includes (a) l1kpreprocs, which preprocesses raw data, and generates normalized gene expression data; (b) egem, which provides some interesting genes as target related genes, and potential transcription factors involved in the function of the compounds; (c) csNMF, which can detect compound signatures, and provide interesting compounds as drug candidates.
LD Score Regression (LDSC)
多样品、多物种、多组学整合分析R package for integrating and analyzing multiple single-cell datasets
Library of Integrated Cellular Signatures L1000
Processed Cell Painting Data for the LINCS Drug Repurposing Project
ML classifiers used to predict Mechanism of Action of chemical perturbagens using L1000 gene expression data
Single-cell Transcriptome and Regulome Analysis Pipeline
2+3可变剪切IDP pipeline for identifying novel genes and isoforms
Scripts to process 10X BCR data and create an AIRR input file (to upload into RepSeq platform)
10X/SS2/spatial transcriptomics/genotyping internal cloud pipeline
发现新的细胞类型以及细胞注释新工具Discovering novel cell types across heterogenous single-cell experiments
A robust framework for HLA-peptide binding pre-diction integrating bidirectional LSTM and multiple head attention mechanism.
Deep learning system to predict drug mechanism of action from gene expression (L1000) and cell viability (PRISM) data
Marker Enrichment Modeling (MEM)
细胞亚群之间的比较、质控工具 A method to rapidly assess cell type identity using both functional and random gene sets
Identification of differentially methylated genes in biomedical data
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.