Comments (1)
In this case the number and order of keys in Faidx.index
does not have a 1:1 correspondence with the index file on disk.
from pyfaidx.
Related Issues (20)
- Incomplete index HOT 3
- Feature request: get sequence length HOT 2
- fool proof faidx .bed file documentation HOT 1
- fetch a chromosome on a FastaVariant which is not part of the vcf raises an error HOT 2
- Transition from Travis-CI to GH actions HOT 1
- python3.8 pip install with --user, on mac, doesn't install faidx script HOT 4
- Using a pathlib.Path object as filename HOT 5
- Migration to pyproject.toml? HOT 7
- Version in APT doesn't have correct dependenceis HOT 2
- BED parsing not fully compliant with spec
- Allow supplying no .bed file and creating just the index HOT 2
- missing setuptools dependency in 0.7.2 HOT 2
- 27 tests fail on `=pyfaidx-0.7.2.1` HOT 1
- FastaVariant for checking the reference genome for the VCF file HOT 1
- Incorrect results when used in parallel HOT 12
- DeprecationWarning: pkg_resources HOT 2
- Insert indels using mutable option HOT 2
- getting UnicodeDecodeError when running faidx with a bed file input HOT 8
- Missing library packaging HOT 1
- --transform nucleotide throws KeyError HOT 2
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from pyfaidx.