Comments (2)
I'm not quite sure how to do this without breaking API, and without introducing some inefficiencies.
from pyfaidx.
I'm going to close this for now, as I'm not sure it's a great idea.
from pyfaidx.
Related Issues (20)
- Header longer than actual fasta header HOT 2
- Incomplete index HOT 3
- Feature request: get sequence length HOT 2
- fool proof faidx .bed file documentation HOT 1
- fetch a chromosome on a FastaVariant which is not part of the vcf raises an error HOT 2
- Transition from Travis-CI to GH actions HOT 1
- python3.8 pip install with --user, on mac, doesn't install faidx script HOT 4
- Using a pathlib.Path object as filename HOT 5
- Migration to pyproject.toml? HOT 7
- Version in APT doesn't have correct dependenceis HOT 2
- BED parsing not fully compliant with spec
- Allow supplying no .bed file and creating just the index HOT 2
- missing setuptools dependency in 0.7.2 HOT 2
- 27 tests fail on `=pyfaidx-0.7.2.1` HOT 1
- FastaVariant for checking the reference genome for the VCF file HOT 1
- Incorrect results when used in parallel HOT 12
- DeprecationWarning: pkg_resources HOT 2
- Insert indels using mutable option HOT 2
- getting UnicodeDecodeError when running faidx with a bed file input HOT 8
- Missing library packaging
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