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mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

msa_con

Generate consensus sequence from a multi sequence alignment

msaindex

A simple MSA indexing tools to deal with MSA files of an arbitrary size with none standard header entries

nf-core-viralrecon

See the main fork of this repository here >>>

nf-flu

Influenza genome analysis Nextflow workflow

nf-validation

Params validation plugin for Nextflow pipelines

nf-villumina

Generic viral Illumina sequence analysis pipeline

noaa_space

nuc-codes

convert gene to genome coordinates

nucleus

Python and C++ code for reading and writing genomics data.

patterns

A curated collection of Nextflow implementation patterns

phandango

an interactive viewer for populations of bacterial genomes linked by a phylogeny

phyloviz-main

A mirror of PHYLOViZ main repository.

pilonpolisher

Iterative polishing with Pilon

pp-sketchlib

Library of sketching functions used by PopPUNK

project-based-tutorials-in-c

A curated list of project-based tutorials in C

pyston

A faster and highly-compatible implementation of the Python programming language.

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

rasusa

Randomly subsample sequencing reads to a specified coverage

readdiff

readmill

A command-line program for processing BAM format DNA sequence.

ruen

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

sabres

A tool that scans VCF data for SARS-CoV-2 Antiviral Resistance

sarssilico

sbcl

Mirror of Steel Bank Common Lisp (SBCL)'s official repository

seq-calc

Calculate Breadth of coverage from either a directory of bam and bai files, or from a single bam and bai file.

shiny_dollop

ska.rust

Split k-mer analysis – version 2

sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings