mashehu Goto Github PK

remark-smartypants

remark plugin to implement SmartyPants

rich-codex

Create rich code images for your docs.

rnadnavar

Pipeline for RNA and DNA integrated analysis for somatic mutation detection

rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

ro-crate-py

Python library for RO-Crate

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

setup-nextflow

setup-nf-test

shiki

A beautiful Syntax Highlighter.

snakemake-rnaseq

RNA-seq workflow for Snakemake based on STAR and featureCounts.

software-suggestions-for-regular-users

Software suggestions for regular users

sphinx-nf_core-markdown-builder

A Sphinx extension to add nf-core flavored markdown generation support.

ssds

Single-stranded DNA Sequencing (SSDS) nf-core pipeline

summit-website

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

terraform-aws-github-runner

Terraform module for scalable GitHub action runners on AWS

test-datasets

Test data to be used for automated testing with the nf-core pipelines

testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

tldr

:books: Simplified and community-driven man pages

tools

Python package with helper tools for the nf-core community.

tree-sitter-nextflow

vale

Spelling and grammar linting for nf-core documentation

viralrecon

UNDER CONSTRUCTION: Assembly and intrahost/low-frequency variant calling for viral samples

vscode-extensionpack

A VSCode extension pack for nf-core developers.

website

Nextflow public web site

whitenoise

Radically simplified static file serving for Python web apps

wordle-clone

yapper

Yapper converts Python docstrings to astro files for use by the Astro static site generator.

zenbu-docker