mashehu Goto Github PK

2023-10-06-devopsdays-madrid

actions-runners

Instructions and scripts for custom GitHub Actions runners

ae-interface

ArrayExpress Archive Web Interface

ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

astro

The web framework that scales with you — Build fast content sites, powerful web applications, dynamic server APIs, and everything in-between ⭐️ Star to support our work!

astro-quickstart

astro-remark-description

Automatically add a description to the frontmatter of your markdown in Astro

astropub-md

Render any Markdown content in Astro, optionally integrating with any existing configuration.

bcellmagic

B cell repertoire analysis pipeline with immcantation framework

bioconda-recipes

Conda recipes for the bioconda channel.

cageseq

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

code-poster

Generate an SVG image from a source image using text taken from code files in a github repository.

colorls

A Ruby gem that beautifies the terminal's ls command, with color and font-awesome icons. :tada:

configs

Config files used to define parameters specific to compute environments at different Institutions

crisprseq

A pipeline for the analysis of CRISPR edited next generation sequencing (NGS) data. CRISPR gene knockouts (KO), CRISPR knock-ins (KI), base editing (BE) and prime editing (PE) experiments

cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

d3-genome-track

devis

DEvis: an R package for aggregation and visualization of differential expression data

docker-hugo-npm

Docker base image that includes Hugo, npm and Pygments

docker-pull

Save your Docker Hub containers from ultimate doom!

dotbot

A tool that bootstraps your dotfiles • Looking for feedback and contributors for Dotbot 2.0 -- see Issue #35

dotfiles

gatsby

Build blazing fast, modern apps and websites with React

genomeannotator

Pipeline for the identification of (coding) gene structures in draft genomes.

ggrepel

:round_pushpin: Repel overlapping text labels away from each other.

homebrew-cask

🍻 A CLI workflow for the administration of Mac applications distributed as binaries

homebrew-fonts

Casks of fonts

homebrew-versions

🔢 Alternate versions of Casks

lncpipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets