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A series of SARS-CoV-2 development testsets for the different pipelines available in GPAS
Genome inference from a population reference graph
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
:snake: Python formulae for Homebrew
:microscope: Scientific formulae for the Homebrew package manager
de novo virus assembler of Illumina paired reads
Supplementary scripts and data for the IVA publication
Code to create a PRG from a Multiple Sequence Alignment file
Cortex on steroids: for larger populations with better assembly
A fast pairwise aligner for genomic and spliced nucleotide sequences
Variant call adjudication
Cli tools for Mykrobe atlas and Mykrobe predictor
Data for mykrobe command line tool
Test species and lineage calls made by mykrobe
Antibiotic resistance predictions in minutes on a laptop
14 NCTC samples for testing PacBio assemblers
Modularised versions of *find scripts
To build a virtual machine with some Sanger pathogens software installed
Mycobacterial pre-processing pipeline
Design PCR primers and check uniqueness across multiple genomes
Python API for cortex
Python3 module for running MUMmer and reading the output
RATT: A tool for transferring genomic annotations between genomes
Read contamination removal
Wrapper scripts to run genome assembly scaffolding tools and scripts to analyse the output for accuracy.
Simulate mutations in genomes
Singularity preexec test script for EBI clusters
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.