maraimelbadri / simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

SimpleITK Notebooks

SimpleITK is an abstraction layer and wrapper around the Insight Toolkit for many languages including C++, Python, R, Java, C#, Lua, Tcl and Ruby.

This repository contains a collection of Jupyter Notebooks, designed for tutorials and presentations. The notebooks demonstrate the use of SimpleITK for interactive image analysis using the Python and R programming languages.

For additional language specific details see the README files in the respective directories (Python details, R details).

The animation below is a visualization of a rigid CT/MR registration process created with SimpleITK and Python (the script used to generate the frames for the animated gif is found in the repository's Utilities directory).

Contributions from the Community

We encourage contributions from the community!!!

1. Report issues you encounter (compatibility/bugs) using the GitHub issue reporting system.
2. Contribute:
   1. bug fixes.
   2. improved versions of existing notebooks, both text and code.
   3. new notebooks.

Just follow the standard GitHub workflow.