mahulchak / dedup

Separates redundant contigs from an assembly

dedup

Separates redundant contigs from an assembly

dedup's Issues

Compile errors

Hi,

I got same errors when compiling this software, is there a bug?

make
g++ -g -Wall -std=c++0x  -c dlib.cpp
dlib.cpp:4: error: expected nested-name-specifier before ‘chroms’
dlib.cpp:4: error: ‘chroms’ has not been declared
dlib.cpp:4: error: expected ‘;’ before ‘=’ token
dlib.cpp:4: error: expected unqualified-id before ‘=’ token
dlib.cpp:5: error: expected nested-name-specifier before ‘ccov’
dlib.cpp:5: error: ‘ccov’ has not been declared
dlib.cpp:5: error: expected ‘;’ before ‘=’ token
dlib.cpp:5: error: expected unqualified-id before ‘=’ token
dlib.cpp:6: error: expected nested-name-specifier before ‘vq’
dlib.cpp:6: error: ‘vq’ has not been declared
dlib.cpp:6: error: expected ‘;’ before ‘=’ token
dlib.cpp:6: error: expected unqualified-id before ‘=’ token
dlib.cpp:16: error: ‘ccov’ does not name a type
dlib.cpp: In function ‘void findInnie(std::vector<mI, std::allocator<mI> >&, mI&)’:
dlib.cpp:39: warning: comparison between signed and unsigned integer expressions
dlib.cpp: In function ‘void findInnieLast(std::vector<mI, std::allocator<mI> >&, mI&)’:
dlib.cpp:93: warning: comparison between signed and unsigned integer expressions
dlib.cpp: At global scope:
dlib.cpp:108: error: variable or field ‘storeCords’ declared void
dlib.cpp:108: error: ‘ccov’ was not declared in this scope
dlib.cpp:108: error: ‘masterRef’ was not declared in this scope
dlib.cpp:108: error: ‘ccov’ was not declared in this scope
dlib.cpp:108: error: ‘masterQ’ was not declared in this scope
dlib.cpp:108: error: expected primary-expression before ‘&’ token
dlib.cpp:108: error: ‘mi’ was not declared in this scope
make: *** [dlib.o] Error 1

Best,
Kun