maggiemcko / songbirdsexdiff

This repository contains scripts and datasets for reproducing the graphs and statistic results of the manuscript 'The gene expression profile of the song control nucleus HVC shows sex specificity, hormone responsiveness, and species specificity among songbirds' https://doi.org/10.3389/fnins.2021.680530

This repository contains scripts and datasets for reproducing the graphs and statistic results of the manuscript 'The gene expression profile of the song control nucleus HVC shows sex specificity, hormone responsiveness, and species specificity among songbirds'  https://doi.org/10.3389/fnins.2021.680530

Scripts	Figure/Table	Data	Note
1_HVC.Rmd	Fig.1A	data/HVC_volume.csv
2_plasma_androgen_levels.Rmd	Fig.S1	data/Plasma_androgen_conc.csv
3_clustering.Rmd	Fig.1B; Fig.S2; Fig.S3	data/Normalized_gene_expression.csv; data/SampleTraits.csv
4_PCA.Rmd	Fig.1C; Fig.S6; Table S3	data/Normalized_gene_expression.csv; data/SampleTraits.csv; data/HVC_volume.csv; data/Plasma_androgen_conc.csv
5_sex_biased_genes.Rmd	Fig.2; Table S1; Fig.3A; Fig.3B; Fig.S4; Fig.S5	data/Sex_biased_gene_expression.csv
6_sex_biased_genes_GO	Fig.3C	data/Cluego_sex_biased
7_Venn	Fig.4	data/Differential_gene_expression_singingbirds.csv
8_singing_GO	Fig.4D	data/Cluego_singing