m081429 / dicom_wsi

Converts whole slide images to DICOM format

dicom-wsi

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Package for converting whole slide image files to DICOM.

• Free software: MIT license
• Documentation: https://dicom-wsi.readthedocs.io.

Features

• Validate DICOM elements

TODO

• Find out how to determine what FileMetaInformationGroupLength should be
• Thorough Unit tests
• Pass validation with dciodvfy
• Add option to add Annotations from XML file
• Ensure Python Idioms are followed (where practical)
• Parse logic from each file type available from the OpenSlide website
  • Aperio (.svs, .tif)
  • Hamamatsu (.vms, .vmu, .ndpi)
  • Leica (.scn)
  • MIRAX (.mrxs)
  • Philips (.tiff)
  • Sakura (.svslide)
  • Trestle (.tif)
  • Ventana (.bif, .tif)
  • Generic tiled TIFF (.tif)

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.