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often used R scripts for bio-informatics work and plotting
License: GNU General Public License v3.0
r-tools's Introduction
๐ญ Postdoctoral Researcher at Max Planck Unit for the Science of Pathogens
๐ Situated in Berlin , Germany
๐ฑ Interested in microbial physiology , computational biology , Omics studies
๐ Most recent publication : CRISPRi library in cyanobacteria
๐ซ Contact me : [email protected]
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r-tools's Issues
lines are not colored when drawing panel.errbars()
with type = "b"
(or "l"
), and grouping. Can be fixed by supplying the col.line
parameter to xyplot
.
in silhouette_analysis()
, optimal cluster number in plot is wrong because it's displaying the index of the cluster, not the optimal number.
For example, if 10 to 20 clusters are tested and 11 is optimal, it will give 2, it's index (instead of 11).
seemingly random NA values can lead to hcust throwing an error
further investigation showed that NAs in combinations that prevent calculation of distance caused the problem
need a way to remove NAs in dist matrix, then hclust will run without errors
add support to handle these sitations
either throw error or implicitly add NAs and missing combinations of vars