Name: Lindsay Clark
Type: User
Company: Seattle Children's Research Institute
Bio: Computational biologist at Seattle Children's. Lots of prior work in plant genetics, population genetics, and polyploidy.
Location: Florida, USA
Blog: https://lvclark.github.io/
Lindsay Clark's Projects
dada2 Nextflow pipeline
adegenet: a R package for the multivariate analysis of genetic markers
Bioconductor data science introduction
Little wrapper function to plot daily COVID-19 cases
Collaborative study guide for Oct. 23 midterm
Example repository for class
Course materials for R programming and bioinformatics
Dungeons & Dragons 5e Stat and Roll Mod Calculator
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Tools for fiberseq data written in rust.
Genome Association Predict Integrate Tools
GWAS software that can handle autopolyploids
Standard operating procedures for H3ABionet data processing and analyses
GWAS Pipeline for H3Africa
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
R package skeleton for CPSC499 lab 11
Demonstration repository for lab meeting
My website
List of packages for R-universe
Custom character sheets for tabletop gaming
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Miscanthus traits
Exploration and testing of methods to identify paralogs in GBS data
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
Supplementary tutorials for polyRAD
polysat 1.7: tools for polyploid microsatellite analysis
SEER, reimplemented in python 🐍🔮