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Baseline inference Algorithm for the STOIC2021 challenge.

License: MIT License

Dockerfile 3.85% Python 84.74% Batchfile 4.88% Shell 6.53%

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oliviergimenez choidm chinmayrane55 joojinho97 hq-deng alwynwu gamanakis randanp skim2257 podismine nnassime imenus241 hanrthu maszim

stoic2021-baseline's Issues

data input/output

Hello,

When running process.py with multiple images in test/images/ct, I also get the following error:

RuntimeError: Multiple case prediction not supported with single-value output interfaces.

I'm not familiar with the evalutils library, do you know whats going wrong here?

Thanks!

running test.sh

Hi Luuk,

I'm trying to run the baseline example, but it doesn't seem to be completing successfully... The docker build process completes fine, but when running sudo ./test.sh I get the following error:

...
build debug logs here
...
Successfully built 45e1fdb80f76
Successfully tagged stoicalgorithm:latest
stoicalgorithm-output
WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
Could not load 1.0.000.000000.0.00.0.0000000000.0000.0000000000.000.zraw using <evalutils.io.SimpleITKLoader object at 0x7fd003f33a90>.
0.5522074103355408
0.5823957324028015
Expected output was not found...
stoicalgorithm-output
farrell@skylab:~/stoic2021-baseline$

Thanks!

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