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ggpie

ggpie - A ggplot2 extension to create pie, donut and rose pie plot

ggplot2

An implementation of the Grammar of Graphics in R

ggpmisc

:exclamation: This is a read-only mirror of the CRAN R package repository. ggpmisc — Miscellaneous Extensions to 'ggplot2'. Homepage: https://docs.r4photobiology.info/ggpmisc/, https://bitbucket.org/aphalo/ggpmisc Report bugs for this package: https://bitbucket.org/aphalo/ggpmisc/issues

ggpmisc-1

R package ggpmisc is an extension to ggplot2 and the Grammar of Graphics

ggpubr

'ggplot2' Based Publication Ready Plots

ggtern

Extension to ggplot2 for plotting ternary diagrams

glottotrees

Preparation of phylogenetic trees by adapting resources from glottolog.com

gunifrac

:exclamation: This is a read-only mirror of the CRAN R package repository. GUniFrac — Generalized UniFrac Distances

hello-world

self-learning python and bioinformatics

ipoptr

ipoptr is an R interface to Ipopt (Interior Point Optimizer), an open source software package for large-scale nonlinear optimization. It can be used to solve general nonlinear programming problems with nonlinear constraints and lower and upper bounds for the controls. Ipopt is written in C++ and is released as open source code under the Eclipse Public License (EPL). It is available from the COIN-OR initiative. The code has been written by Carl Laird and Andreas Waechter, who is the COIN project leader for Ipopt.

keggmap

ggplot2 to plot kegg pathway based on xml file

linket

maaslin2

MaAsLin2: Microbiome Multivariate Association with Linear Models

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

mapchina

R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.

matr

Metagenomics Analysis Tools

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

metap

Metagenomics profiling is a Perl package for 16S rRNA gene, metagenomics and metatranscriptomics analysis package

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mg-rast-tutorials

microbiomemarker

R package for microbiome biomarker discovery

microbiotaprocess

multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

multiomicanalysis

Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper

nanopore

numericalecology

code for Numerical Ecology with R

original_data

代码运行数据

pathview

Clone from pathview on bioconductor fixing a clash with dplyr

pheatmap

Pretty heatmaps

prog-old

Anciens programmes du labo