lucasrla / wsi-preprocessing Goto Github PK
View Code? Open in Web Editor NEWSimple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
License: GNU General Public License v3.0
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
License: GNU General Public License v3.0
Hi, I have some problem about running the "example.py".
When I run the code using CMU-1.svs,
the process will hanging at pp.calculate_filters("slides_mpp_otsu.csv", "", "tiles_filters.csv")
without errors.
This phenomenon also happened when I using my own data.
In the other hand,
if I run the code below first, then run pp.calculate_filters("slides_mpp_otsu.csv", "", "tiles_filters.csv")
,
(that is, run calculate_filters
funtion separately)
it will success.
What happened to this phenomenon?
Is it related to ProcessPoolExecutor?
import wsi_preprocessing as pp
# if, for instance, CMU-1.svs is in your current directory:
slides = pp.list_slides(".")
pp.save_slides_mpp_otsu(slides, "slides_mpp_otsu.csv")
# this may take some minutes, depending on your local machine
pp.run_tiling("slides_mpp_otsu.csv", "tiles.csv")
Thank you so much!!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.