For installation, please visit the main web page at vanted.org. Here, you find the most-recent version of the source code.
VANTED is a Java based extendable network visualisation and analysis tool with focus on applications in the life sciences.
It allows users to create and edit networks, as well as mapping experimental data onto networks. Experimental datasets can be visualized on network elements as graphical charts to show time series data or data of different treatments, as well as environmental conditions in the context of the underlying biological processes. Built-in statistical algorithms allow an easy and fast evaluation of mapped data (e.g. t-Test or correlation analysis).
The functionality of VANTED can be extended by installing one or more of the provided Addons using the built-in Addon Manager. For an overview see: here.
New Addons can be developed from scratch, using built-in API for manipulation of networks and data. A simple step-by-step guide for developing custom Addons can be found here.
The development of VANTED is an ongoing process and we try to fix bugs and implement new features as soon as possible. Updates will be delivered on a regular basis.
If you have questions or suggestions regarding VANTED, please contact us at: [email protected]
Bugfix in Open-File dialog after exporting to a website
Improve KEGG search with organisms and pathways labelling
New feature: Modify the drawn grid (Edit > Preferences > Views > Network View)
Fix regression in 2.8.6+ concerning attribute labels (GraphML)
Improve GraphML import compatibility: recognize certain top-level tags as node/edge labels
You can download and install this version here.
Bugfixes for v2.8.6 and improvements in add-ons compatibility
Node ID as fallback label where suitable
Improve GraphML import compatibility
Change network view icon to Vanted logo
You can download and install this version here.
Update for KEGG Database:
- Resolve issues replacing ID with name
- Modify Labels KEGG: disable for non-KEGG graphs
Improve GraphML import compatibility
You can download and install this version here.
Update certificate, code signing JAR files
Fix regression concerning Vanted preferences
You can download and install this version here.
Update list connection in KEGG API, as per Release 104
You can download and install this version here.
Update for Biomodels Database:
REST implementation
New multi-parameter queries
New part-string matching for more search results
Fix redirecting for KEGG Database
You can download and install this version here.
Fix Log4j vulnerability
You can download and install this version here.
Bugfixes and internal improvements: Algorithms
Bugfixes and internal improvements: Default graph format
You can download and install this version here.
New layout: Stress Minimisation
New layout: Multilevel Framework
Use commons-math3 3.6.1
Resolve attribute issue
Deactivate Biomodels DB (current version)
New algorithm: Remove parallel edges
Bugfixes and internal updates, e.g. new JSON library
You can download and install this version here.
Resolve OS and compatibility issue
You can download and install this version here.
Resolve constant updating
Minimum Java 8 compatibility
Bugfixes: Clustering
RIMAS server migration
HTTPS server connections
Resolves HTTP-HTTPS redirecting
BioModels: Handles parsing exception in queries
Add-on Manager and Add-on Pane improvements
Undo/Redo additions
Usability improvements:
Menu updates
First graph window fits in pane
Undo limit increases to 20 operations
Standard format becomes GML
Internal API improvements
Replaces non-API Sun references
Java 9 Compatibility Update
Several algorithms improved, including
Find and Layout Circles
Merge Nodes
Erdos-Renyi Graph Generation
Watts-Strogatz Graph Generation
Grubbs' Test
David Test
Minor BioModels update
OS X in-graph grid movement fix
Overall internal improvements
You can download and install this version here.
High DPI Support feature
Nimbus LookAndFeel is now disabled
Edge selection positioning
Metacrop stability improvements
Detached mode update
Node Functions enhancements
Server update
Windows Installer update
Overall performance and stability improvements
Minor bug fixes
You can download and install this version here.
Fixed drawing problems of nodes with border size 1
Fixed GraphML reader.
Added support for more SBGN shapes
Added BioModels backup webservice location
Changed MetaCrop maps to support new SBGN Shapes
You can download and install this version here.
Minor bugfixes
Native support for more SBGN Shapes
Relative positioning of labels
You can download and install this version here.
Bugfixes including broken compatibility with SBGN-Ed
Update to new jsbml 1.1 library
Changes and bugfixes in APIs for Developers
You can download and install this version here.
Bugfixes:
Code clean-up and removal of bugs using bug-scanner tools
Cluster background was not exported to image
Introducing edge bends is now working properly
Sometimes specific changes didn't visually appear and a redraw had to be triggered
Improvements:
Update scan improved to support md5-hash and includes add-ons as well
Performance improvement for larger networks (30k Nodes and more)
Support for the SBML-Layout extension
Added Animation Framework
Selection frames can now be drawn inside nodes using Ctrl+Shift
Nodes can be created inside other nodes using Ctrl+Shift
You can download and install this version here.
Bugfixes:
start up problems, when no previous preferences were found to select LookAndFeel
several minor bugfixes found and fixed throughout heavy usage
Improvements:
the "Remove Connecting Nodes" algorithm will now not only remove nodes and keep the overall connection of the network, but also respect the original direction
the ESC key will also deselect network elements
You can download and install this version here.
This release contains only minor bugfixes which improve user experience and speed.
You can download and install this version here.
Important !!!
Due to a bug in the loading process the SBML loader was broken.
This has been fixed but you need to install the new release of VANTED using the installer. This bug will not be fixed using the automated VANTED update.
You can download and install this version here.
Please excuse us for the inconvenience.
Users who went through the automatic update to get 2.5.1 will see an error message when trying to load SBML documents. This error message will not appear for users who did a fresh install of VANTED 2.5.1.
Changes are listed below:
Drawing speed improvement when loading and exploring large networks
Reorganisation of menus and sidepanels
Support for downloads of curated SBML models from Biomodels database
Reenabling support to create GO and KEGG hierarchies
Better support for program preferences
Tons of bug fixes
Changes are listed below:
Updated support for new KEGG REST API
bug fixes
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