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View Code? Open in Web Editor NEWA tool for multiscale forward-time simulation of protein evolution.
License: GNU General Public License v3.0
A tool for multiscale forward-time simulation of protein evolution.
License: GNU General Public License v3.0
below a certain population size (usually N<50), the population can collapse if no births occur at a given generation. This case should be handled, at least for now, by a clean exit and appropriate message in the log.
see http://www.genetics.org/content/190/2/655
this model has native epistasis
mutation currently defaults to RandomNormal() even if gamma is selected.
in principle I think we can separate the core loop in threads, so we should check first that this is indeed feasible
The user is forced to create a population by using a different executable. Maybe we can integrate this to the main program so that the initial pop. will be instantiated automatically if the user does not have one.
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