louis-pare / tpba

Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.

Transcript or Protein Blast Annotation.

What is it?

This snakemake pipeline is a wrapper around blast which will generate file correspondance between a list of transcript or protein and some proteomes.

How to make it work?

To make this snakemake pipeline works, you need to install snakemake and blast.

After installation, you will need to complete the config.yaml file, then the pipeline can be launched using the snakemake command.

Output description

The pipeline will generate several outputs into the given output directory. Firstly, it will create a blastdb folder in which the blast databases will be saved.

The second folder named blast_result will contain the raw blast results for each proteomes.

A text file will be created for each given proteomes with the given format: transcript (tab) homologuous protein.

Finally, a text file called "Statistcs.txt" will contain the proportion of transcript containing a homologuous protein in each proteomes.