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CFDEM with modified multiscale CFD/VOF-DEM solvers developed by Linhan Ge

License: GNU General Public License v3.0

C 43.37% C++ 45.98% Objective-C 0.17% Python 0.07% Shell 8.36% Roff 0.08% MATLAB 1.94% Pascal 0.03%

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cfdemcoupling-lg's Issues

Some issues about examples in tutorials.

Hi All,

I have successfully compiled and installed all files as suggested by the contributor. But I meet some problems when I tried to run the examples in tutorials. As the solver of cfdemSolverVoF is of the greatest interest to me, I tried to run the VOF-DEMFluidizedBed case at first. But an error being reported in terminal that "DEMFluidizedBed/CFD/0/alpha.water.orig': No such file or directory".

Then I run the fluidized bed case in the cfdemSolverDiffusion file with the diffusion solver. One error jumped out and indicated there wasn't the file containing mesh information.

How to solve these issues? Or anyone who can run these cases smoothly may provide your advice? Thanks in advance.

Cheers,
Yuhan.

Segmentation fault erro

Hi
I am trying to run bubbleRisingAgainstParticles. I managed to build the code successfully but when running the case I get a segmentation fault error:

[0] #0  [1] #0  [2] #0  [3] #0  Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&)--------------------------------------------------------------------------
A process has executed an operation involving a call to the
"fork()" system call to create a child process.  Open MPI is currently
operating in a condition that could result in memory corruption or
other system errors; your job may hang, crash, or produce silent
data corruption.  The use of fork() (or system() or other calls that
create child processes) is strongly discouraged.

The process that invoked fork was:

  Local host:          [[2591,1],0] (PID 19168)

If you are *absolutely sure* that your application will successfully
and correctly survive a call to fork(), you may disable this warning
by setting the mpi_warn_on_fork MCA parameter to 0.
--------------------------------------------------------------------------
 at ??:?
[1] #1  Foam::sigSegv::sigHandler(int) at ??:?
 at ??:?
[2] #1  Foam::sigSegv::sigHandler(int)[3] #1  Foam::sigSegv::sigHandler(int) at ??:?
[0] #1  Foam::sigSegv::sigHandler(int) at ??:?
[1] #2  ? at ??:?
[2]  at ??:?
#2  ?[3] #2  ? at ??:?
[0] #2  ? in "/lib64/libpthread.so.0"
[1] #3  Foam::curvatureModels::vofsmooth::smoothen(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&) const in "/lib64/libpthread.so.0"
[2] #3  Foam::curvatureModels::vofsmooth::smoothen(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&) const in "/lib64/libpthread.so.0"
[3] #3  Foam::curvatureModels::vofsmooth::smoothen(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&) const in "/lib64/libpthread.so.0"
[0] #3  Foam::curvatureModels::vofsmooth::smoothen(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&) const at ??:?
[3] #4  Foam::curvatureModels::vofsmooth::calculateK(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>&) const at ??:?
[1] #4  Foam::curvatureModels::vofsmooth::calculateK(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>&) const at ??:?
[2] #4   at ??:?
[0] #4  Foam::curvatureModels::vofsmooth::calculateK(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>&) constFoam::curvatureModels::vofsmooth::calculateK(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>&) const at ??:?
[1] #5  Foam::interfaceProperties::interfaceProperties(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::IOdictionary const&) at ??:?
[0] #5  Foam::interfaceProperties::interfaceProperties(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::IOdictionary const&) at ??:?
[2] #5  Foam::interfaceProperties::interfaceProperties(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::IOdictionary const&) at ??:?
[3] #5  Foam::interfaceProperties::interfaceProperties(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::IOdictionary const&) at ??:?
[0] #6  Foam::immiscibleIncompressibleTwoPhaseMixture::immiscibleIncompressibleTwoPhaseMixture(Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh> const&) at ??:?
[1] #6  Foam::immiscibleIncompressibleTwoPhaseMixture::immiscibleIncompressibleTwoPhaseMixture(Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh> const&) at ??:?
[2] #6  Foam::immiscibleIncompressibleTwoPhaseMixture::immiscibleIncompressibleTwoPhaseMixture(Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh> const&) at ??:?
[3] #6  Foam::immiscibleIncompressibleTwoPhaseMixture::immiscibleIncompressibleTwoPhaseMixture(Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh> const&, Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh> const&) at ??:?
[1] #7   at ??:?
[0] #7   at ??:?
[2] #7   at ??:?
[3] #7  ???? at ??:?
[2] #8  __libc_start_main at ??:?
[1] #8  __libc_start_main at ??:?
[0] #8  __libc_start_main at ??:?
[3] #8  __libc_start_main in "/lib64/libc.so.6"
[2] #9   in "/lib64/libc.so.6"
[1] #9   in "/lib64/libc.so.6"
[0] #9   in "/lib64/libc.so.6"
[3] #9  ???? at ??:?
[workstation01:19168] *** Process received signal ***
[workstation01:19168] Signal: Segmentation fault (11)
[workstation01:19168] Signal code:  (-6)
[workstation01:19168] Failing at address: 0x100042c00004ae0
[workstation01:19168] [ 0]  at ??:?
 at ??:?
/lib64/libpthread.so.0(+0xf370)[0x7fd583e49370]
[workstation01:19168] [ 1] /lib64/libpthread.so.0(raise+0x2b)[0x7fd583e4923b]
[workstation01:19168] [ 2] /lib64/libpthread.so.0(+0xf370)[0x7fd583e49370]
[workstation01:19168] [ 3] [workstation01:19169] *** Process received signal ***
[workstation01:19170] *** Process received signal ***
/home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth8smoothenERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x37)[0x7fd58add5ad7]
[workstation01:19168] [ 4] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth10calculateKERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERNS2_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x6c)[0x7fd58add658c]
[workstation01:19168] [ 5] [workstation01:19170] Signal: Segmentation fault (11)
[workstation01:19170] Signal code:  (-6)
[workstation01:19170] Failing at address: 0x100042c00004ae2
[workstation01:19169] Signal: Segmentation fault (11)
[workstation01:19169] Signal code:  (-6)
[workstation01:19169] Failing at address: 0x100042c00004ae1
/home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZN4Foam19interfacePropertiesC2ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS1_INS_6VectorIdEES2_S3_EERKNS_12IOdictionaryE+0x7f6)[0x7fd58ad9be96]
[workstation01:19168] [ 6] /data/home/bb/aaa/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib/libimmiscibleIncompressibleTwoPhaseMixture.so(_ZN4Foam39immiscibleIncompressibleTwoPhaseMixtureC2ERKNS_14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEERKNS1_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x2a)[0x7fd5863d9d5a]
[workstation01:19168] [ 7] cfdemSolverVoF[0x44c92d]
[workstation01:19168] [ 8] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7fd583a9ab35]
[workstation01:19168] [ 9] [workstation01:19169] [ 0] [workstation01:19170] [ 0] cfdemSolverVoF[0x456039]
[workstation01:19168] *** End of error message ***
/lib64/libpthread.so.0(+0xf370)[0x7febc943d370]
[workstation01:19169] [ 1] /lib64/libpthread.so.0(+0xf370)[0x7fc059e08370]
[workstation01:19170] [ 1] /lib64/libpthread.so.0(raise+0x2b)[0x7febc943d23b]
[workstation01:19169] [ 2] /lib64/libpthread.so.0(raise+0x2b)[0x7fc059e0823b]
[workstation01:19170] [ 2] /lib64/libpthread.so.0(+0xf370)[0x7fc059e08370]
/lib64/libpthread.so.0(+0xf370)[0x7febc943d370]
[workstation01:19169] [ 3] [workstation01:19170] [ 3] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth8smoothenERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x37)[0x7fc060d94ad7]
[workstation01:19170] [ 4] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth8smoothenERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x37)[0x7febd03c9ad7]
[workstation01:19169] [ 4] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth10calculateKERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERNS2_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x6c)[0x7fc060d9558c]
[workstation01:19170] [ 5] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth10calculateKERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERNS2_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x6c)[0x7febd03ca58c]
[workstation01:19169] [ 5] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZN4Foam19interfacePropertiesC2ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS1_INS_6VectorIdEES2_S3_EERKNS_12IOdictionaryE+0x7f6)[0x7fc060d5ae96]
[workstation01:19170] [ 6] /data/home/bb/aaa/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib/libimmiscibleIncompressibleTwoPhaseMixture.so(_ZN4Foam39immiscibleIncompressibleTwoPhaseMixtureC2ERKNS_14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEERKNS1_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x2a)[0x7fc05c398d5a]
[workstation01:19170] [ 7] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZN4Foam19interfacePropertiesC2ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS1_INS_6VectorIdEES2_S3_EERKNS_12IOdictionaryE+0x7f6)[0x7febd038fe96]
[workstation01:19169] [ 6] /data/home/bb/aaa/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib/libimmiscibleIncompressibleTwoPhaseMixture.so(_ZN4Foam39immiscibleIncompressibleTwoPhaseMixtureC2ERKNS_14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEERKNS1_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x2a)[0x7febcb9cdd5a]
[workstation01:19169] [ 7] cfdemSolverVoF[0x44c92d]
[workstation01:19170] [ 8] cfdemSolverVoF[0x44c92d]
[workstation01:19169] [ 8] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7fc059a59b35]
[workstation01:19170] [ 9] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7febc908eb35]
[workstation01:19169] [ 9] cfdemSolverVoF[0x456039]
[workstation01:19169] *** End of error message ***
cfdemSolverVoF[0x456039]
[workstation01:19170] *** End of error message ***
 at ??:?
[workstation01:19171] *** Process received signal ***
[workstation01:19171] Signal: Segmentation fault (11)
[workstation01:19171] Signal code:  (-6)
[workstation01:19171] Failing at address: 0x100042c00004ae3
[workstation01:19171] [ 0] /lib64/libpthread.so.0(+0xf370)[0x7f11fe3ec370]
[workstation01:19171] [ 1] /lib64/libpthread.so.0(raise+0x2b)[0x7f11fe3ec23b]
[workstation01:19171] [ 2] /lib64/libpthread.so.0(+0xf370)[0x7f11fe3ec370]
[workstation01:19171] [ 3] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth8smoothenERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x37)[0x7f1205378ad7]
[workstation01:19171] [ 4] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZNK4Foam15curvatureModels9vofsmooth10calculateKERNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERNS2_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x6c)[0x7f120537958c]
[workstation01:19171] [ 5] /home/bb/aaa/OpenFOAM/aaa-5.x/platforms/linux64GccDPInt32Opt/lib/libkva_interfaceProperties.so(_ZN4Foam19interfacePropertiesC2ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS1_INS_6VectorIdEES2_S3_EERKNS_12IOdictionaryE+0x7f6)[0x7f120533ee96]
[workstation01:19171] [ 6] /data/home/bb/aaa/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib/libimmiscibleIncompressibleTwoPhaseMixture.so(_ZN4Foam39immiscibleIncompressibleTwoPhaseMixtureC2ERKNS_14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEERKNS1_IdNS_13fvsPatchFieldENS_11surfaceMeshEEE+0x2a)[0x7f120097cd5a]
[workstation01:19171] [ 7] cfdemSolverVoF[0x44c92d]
[workstation01:19171] [ 8] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7f11fe03db35]
[workstation01:19171] [ 9] cfdemSolverVoF[0x456039]
[workstation01:19171] *** End of error message ***

Using OpenMPI 3 with GCC 8.2.0. All the components work independently, I can run the interFoam with vofsmooth and we can independently run CFDEM cases built independently.

Just wondering if you have had such errors before?

Thanks

A toturial case

I've read this code partly and found so many modification therein including the new diffusion-based average method which is the most intereted. Could you please provide a toturial case for this solver so that reseachers can make good used of your code?

Two libs files are missing here !

When I tried to run the VOF-DEMFluidizedBed tutorial case, I got stuck with FOAM Warning
"dlopen error: libsimpleFunctionObjects.so: cannot open shared object file: No such file or directory" and
"dlopen error: libsimpleSwakFunctionObjects.so: cannot open shared object file: No such file or directory".
And the case stopped running. I found the case need to call
"libfvOptionsCFDEM.so", "libsimpleFunctionObjects.so" and "libsimpleSwakFunctionObjects.so" in controlDict.
Then I checked lib files in home/OpenFOAM/OpenFOAM-5.x/platforms/Linux64GccDPInt320pt/lib and found that there is no "libsimpleFunctionObjects.so" file and "libsimpleSwakFunctionObjects.so" file.
So I wonder if it's the reason for the failure of starting calculating.

There is no etc file!

As I want to compile cfdem with the CFDEM documentation! faced error which need etc file in : CFDEM/CFDEMcoupling-public-5.x/src/lagrangian/cfdemParticle/etc

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