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genprog

Genetic programming in C

gimplugins

C plugins for GIMP

grammars-v4

Grammars written for ANTLR v4; expectation that the grammars are free of actions.

graphtyper

Population-scale genotyping using pangenome graphs

greasemonkey

My Greasemonkey scripts

grid4drawing

Drawing Grid for artists

hadoop-sandbox

Apache Hadoop Sandbox

hershey

Tools for the Hershey Vector Font

hts-rdf

Managing sequencing data with RDF

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htsfuse

FUSE (Filesystem in Userspace) accessing remote files behind http. It was first designed for bioinformatics but can be used for general purpose.

htsguile

htslib + guile

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

htsjni

Native java bindings for htseq

htsjsbook

htslib

C library for high-throughput sequencing data formats

htsplusplus

Select variants from VCF/BCF spaced by a distance 'd'.

ibddb

IBD database/query

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

igvfox

firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox

j4make

java Makefile Graph parser

java2graph

Export java model/UML of classes as a graph (graphiz dot, gexf/gephi ) First described in http://plindenbaum.blogspot.fr/2008/10/javadoc-is-not-enough-java2dia.html

javanotebook

What's new in Java

jbwa

Java Bindings (JNI) for bwa

jcommander

Command line parsing framework for Java

jenaorm

Read-Only Object-Relational-Mapping for Apache-Jena

jnihts

native java bindings (jni) for samtools

jsandbox

My java Sandbox

jsonkit

json tools

jsontribble

Tribble codec for JSON