Name: Johanna Bayer
Type: User
Company: Donders Institute for Brain, Cognition and Behaviour
Bio: Machine Learning, Neuroimaging, Normative Models, Bayesian Models, @ohbm, @brainhackorg, @brainhack-aus, Open Science @openscieny, editor @openjournals
Twitter: likeajumprope
Location: Netherlands
Johanna Bayer's Projects
Harmonization of multi-site imaging data with ComBat (Python)
neuroCombat R package
A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images! Complements the work in Neuroimage by Pomponio et al. (2019).
Git repo for NeuroMiner 1.05
A collection of notebooks demonstrating plotting with matplotlib
Spatial methods for python
A template repository for projects
Website for the Open Science Room at the OHBM 2021 meeting
Website for the OHBM Open Science Special Interest Group
Tutorials to apply cross decomposition methods in python
A repo for the pre-course work at home exercises
Pseudo API for Google Trends
Training material for reproducible research course
Sample dataset for problem set 5
Website of the BrainHack School
An ABCD-ReproNim project to prototype methods and procedures for handling (restricted) ABCD data using NIDM to create a ReproPond that can be integrated with similar data from other sources. We will use the Child Behavior Checklist (CBCL) as a test case, but the results should be generalizable to any NDA-hosted data schema.
Sparkle Online Event Platform
Linux regular expressions course using the Spartan HPC
This repo is for demonstration purposes only.
studyforrest.org: Structural scans (T1, T2, SWI, DTI)
TAPAS - Translational Algorithms for Psychiatry-Advancing Science
Host repository for The Turing Way: a how to guide for reproducible data science
Deploying a singularity container so that it behaves like one would have installed software natively