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kubota_puqtl

Codes used in puQTL manuscript

lime

lisa2

lpri

LPRI: A workflow for lung cancer patients' stratification

m6a

Methylation pattern mediated by m6A regulator and tumor microenvironment invasion in lung adenocarcinoma

m6a-seq_analysis_workflow

A pipeline to process m6A-seq data and down stream analysis.

machine-learning-in-r

Workshop (6 hours): preprocessing, cross-validation, lasso, decision trees, random forest, xgboost, superlearner ensembles

marvel

matchannot

Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.

megadepth

R interface to megadepth: BigWig and BAM related utilities

melanoma_pscore

merip-seq_m6a

Code to perform MeRIP-seq Analysis.

meskit

A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations

metamarkers

Efficiently compute robust markers across single-cell datasets

microbiome_reconstruction

mintmap

This is the code repository, to download MINTmap for basic usage please visit our website at

mirge

miRge - microRNA alignment software for small RNA-seq data, now at v2.0

mirnaseq_template

Template for analysis of Illumina miRNA-Seq data

mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

modalv

monalisa

binned motif enrichment analysis and visualisation

motifmatchr

Fast motif matching in R

mouse-thyroid-invitro

movapa

movics

Multi-Omics integration and VIsualization in Cancer Subtyping

msea

Detection and quantification of mutation hotspots through mutation set enrichment analysis (MSEA)

multi-omics-analysis-of-luad

Multi-omics integrative analysis of lung adenocarcinoma

muscat

Multi-sample multi-group scRNA-seq analysis tools

music

Multi-subject Single Cell Deconvolution

mutationhotspots

Algorithms to detect mutational hotspots