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Hi there 👋 (job opportunities)

From coding algorithms to decoding development, I’ve evolved into a biologist with roots in theoretical computer science.

I try to improve our understanding of embryo morphogenesis: how cells arrange in tissues, tissues in organs and eventually organs in fully functional organisms. I am doing so by developing novel computational ways of quantifying and visualising whole embryos at the single-cell scale. I develop in Python and work mainly in Machine Learning, Computer Vision and Graph Theory.

I also teach Python to futur biologists at Aix-Marseille University.

I am the head of the group Computer Science, Morphogenesis and Variability at the Developmental Biology Institute of Marseille, in Marseille.

You can find more information about my group on its official webpage.

You can find job opportunities on the group job page.

The group GitHub.

Léo's Projects

astec icon astec

Segmentation and Tracking algorithm from Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis

astec-examples icon astec-examples

Examples on how to use the output of ASTEC from Guignard, Fiuza et al.

cell-cell-interaction-model icon cell-cell-interaction-model

Cell-cell interaction model from Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis

ilastik2tlp icon ilastik2tlp

A small script to convert ilastik tracking output into tulip graphs

mouse-atlas icon mouse-atlas

Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level

napari icon napari

napari: a fast, interactive, multi-dimensional image viewer for python

tls-morpho icon tls-morpho

A script to measure Trunk like structure morphology

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