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Name: LeanGreen
Type: User
Location: BaiDiCheng
Name: LeanGreen
Type: User
Location: BaiDiCheng
Exome/Capture/RNASeq Pipeline Implementation using snakemake
A cancer immunotherapy pipeline
an R package for ancestry analysis
A Toolkit for analyzing next-generation DNA Re-Sequencing data
RNAseq analysis notes from Tommy Tang
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
Processing of single cell RNAseq data for the recovery of TCRs in python
:snake: Snakefiles for common RNA-seq data analysis workflows.
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
tcR: an R package for immune receptor repertoire advanced data analysis.
Web-application for T cell receptors' repertoires analyzing
A pipe for extracting TCRs from RNAseq data.
:exclamation: This is a read-only mirror of the CRAN R package repository. tcR — Advanced Data Analysis of Immune Receptor Repertoires. Homepage: http://imminfo.github.io/tcr/ Report bugs for this package: https://github.com/imminfo/tcr/issues
Scripts and files that I use to analyse T cell receptor repertoire data, produced by deep-sequencing
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
Code associated with Brown, Raeburn, and Holt, Profiling tissue-resident T cell repertoires by RNA sequencing, Genome Medicine 2015
A collection of scripts used for tracking T-cell expansions using HTS
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
Tools to handle reads sequenced with unique molecular identifiers (UMIs).
Cloned from https://sourceforge.net/projects/varscan, with possible improvement
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.