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asgaldros

backwardmem

Porting of backwardMEM

benchhg

bioconda-recipes

Conda recipes for the bioconda channel.

eflux

foundationscs

Foundations of Computer Science

graphpp

Specific strings from variation graphs

hla-zoo

genome variation graphs constructed from HLA GRCh38 ALTs

htslib

C library for high-throughput sequencing data formats

klocate

ldenti.github.io

mfcnv

mfmi

panpp

Specific strings from multiple genomes

pasgal

Parallel Sequence to Graph Alignment

pingpong

Comparative genome analysis using substring-free sample-specific strings (SFS)

ppvcf

Library for the parallel parsing of VCF files

pydna-pnrr

rlcsa

Convenient repository for/fork of the RLCSA library from http://www.cs.helsinki.fi/group/suds/rlcsa/

rnaseqreadsimulator

RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.

ropebwt2

Incremental construction of FM-index for DNA sequences

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

smg

snp-sites

Finds SNP sites from a multi-FASTA alignment file

survivor

Toolset for SV simulation, comparison and filtering

svdss-experiments

tabixpp

C++ wrapper to tabix indexer

tt-mars

Structural Variants Assessment Based on Haplotype-resolved Assemblies

vargeno

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

vg

tools for working with genome variation graphs