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Hi, I’m Luke 👋

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Courtesy of https://github.com/anuraghazra/github-readme-stats

My recent GitHub activity

Some recent blog posts 📝

More at https://lazappi.id.au

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Luke Zappia's Projects

now-playing-profile icon now-playing-profile

Originally created by github.com/natemoo-re, a small Spotify widget suitable for your profile! Read the "spotify-setup-guide.md" to get started

oecd-housing icon oecd-housing

Some basic analysis of housing statistics from the OECD

openproblems icon openproblems

Formalizing and benchmarking open problems in single-cell genomics

ozsinglecell2019 icon ozsinglecell2019

Analysis of the Swarbrick dataset for the Oz Single Cell Challenge 2019

phd-commits icon phd-commits

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.

phd-thesis icon phd-thesis

My PhD thesis - "Tools and techniques for single-cell RNA sequencing data"

phd-thesis-analysis icon phd-thesis-analysis

Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data

prettytc icon prettytc

Script for pretty printing of TeXcount output

requestival icon requestival

Analysis of the songs played during triple j's "Requestival" event

rnatools icon rnatools

Functions for processing RNA-seq data using multiple methods. Provides consistent interfaces for normalisation, testing, visualisation etc.

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scater icon scater

Single cell analysis tools for expression from RNA-seq in R

scrna-tools icon scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

seurat icon seurat

R toolkit for single cell genomics

singlecellexperiment icon singlecellexperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tidyr icon tidyr

Easily tidy data with spread and gather functions.

uberdoc icon uberdoc

Uberdoc is a wrapper script for pandoc which provides a build system for large documents

unimelbdown icon unimelbdown

An updated R Markdown thesis template using the bookdown package

wcplot icon wcplot

Produce plots from prettytc log files

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