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Elucidate and visualise a compound's mechanism of action by combining structure-based target prediction with gene expression-based causal reasoning, plus pathway enrichment to put results into biological context. GUI-based (minimal coding experience required).

Home Page: https://laylagerami.github.io/MAVEN/

License: GNU General Public License v3.0

R 97.24% Dockerfile 2.72% Shell 0.03%
bioinformatics chemoinformatics mechanism-of-action moa shiny-apps drug-discovery carnival dorothea progeny pidgin

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maven's Issues

MAVEN needs updates

Since initial development, some updating is required

DONE: CARNIVAL to be upgraded to current bioconductor version (v2.6.2)

To do:

  • Update install script
  • Update server files
  • Test performance with latest solver versions (CBC and CPlex)

Would be nice:

  • Add new Gurobi solver

DONE: MSigDB signatures to be updated to current version (v2022.1)

To do:

  • Fetch new .gmt files
  • Update server file
  • Test enrichment and hyperlinking functions

Documentation to be updated

To do:

  • Update installation instructions
  • Update case study

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