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brainstorm's Issues

Setup install fails cause of zip_safe option?

Problem

Running python setup.py install results in the installation failing completely with the output shown under the reproduce section. Commenting out zip_safe=False from setup.py for me (and viceversa!) and running it again seems to resolve the problem.

Reproduce

I have reproduced this issue on a fresh ubuntu precise installation and fresh Apple Mountain Lion python venv. I have also attempted to run python setup.py install a couple of times just to see if the modification to setup.py was unrelated, but I still end up with the same results.

On first attempts of running python setup.py install I get the following:

vagrant@precise64:/vagrant$ sudo python setup.py install
running install
Checking .pth file support in /usr/local/lib/python2.7/dist-packages/
/usr/bin/python -E -c pass
TEST PASSED: /usr/local/lib/python2.7/dist-packages/ appears to support .pth files
running bdist_egg
running egg_info
writing requirements to brainstorm.egg-info/requires.txt
writing brainstorm.egg-info/PKG-INFO
writing namespace_packages to brainstorm.egg-info/namespace_packages.txt
writing top-level names to brainstorm.egg-info/top_level.txt
writing dependency_links to brainstorm.egg-info/dependency_links.txt
writing entry points to brainstorm.egg-info/entry_points.txt
reading manifest file 'brainstorm.egg-info/SOURCES.txt'
writing manifest file 'brainstorm.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/brainstorm
copying brainstorm/__init__.py -> build/lib.linux-x86_64-2.7/brainstorm
copying brainstorm/main.py -> build/lib.linux-x86_64-2.7/brainstorm
copying brainstorm/manipulator.py -> build/lib.linux-x86_64-2.7/brainstorm
copying brainstorm/viewer.py -> build/lib.linux-x86_64-2.7/brainstorm
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/__init__.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/main.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/manipulator.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/viewer.py -> build/bdist.linux-x86_64/egg/brainstorm
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/main.py to main.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/manipulator.py to manipulator.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/viewer.py to viewer.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/namespace_packages.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
creating 'dist/brainstorm-0.1-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing brainstorm-0.1-py2.7.egg
creating /usr/local/lib/python2.7/dist-packages/brainstorm-0.1-py2.7.egg
Extracting brainstorm-0.1-py2.7.egg to /usr/local/lib/python2.7/dist-packages
Adding brainstorm 0.1 to easy-install.pth file
Installing brainstorm script to /usr/local/bin

Installed /usr/local/lib/python2.7/dist-packages/brainstorm-0.1-py2.7.egg
Processing dependencies for brainstorm==0.1
Searching for cliff
Reading http://pypi.python.org/simple/cliff/
Reading https://github.com/dreamhost/cliff
Reading https://github.com/dreamhost/cliff/tarball/master
Best match: cliff 1.1.2
Downloading http://pypi.python.org/packages/source/c/cliff/cliff-1.1.2.tar.gz#md5=9c0da418a07fd4438fbc1042a4b5a226
Processing cliff-1.1.2.tar.gz
Running cliff-1.1.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-6z6MXc/cliff-1.1.2/egg-dist-tmp-6Ts3wQ
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.10.tar.gz
Extracting in /tmp/easy_install-6z6MXc/cliff-1.1.2/temp/tmptcDGNa
Now working in /tmp/easy_install-6z6MXc/cliff-1.1.2/temp/tmptcDGNa/distribute-0.6.10
Building a Distribute egg in /tmp/easy_install-6z6MXc/cliff-1.1.2
/tmp/easy_install-6z6MXc/cliff-1.1.2/distribute-0.6.10-py2.7.egg
Adding cliff 1.1.2 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/cliff-1.1.2-py2.7.egg
Searching for boto
Reading http://pypi.python.org/simple/boto/
Reading http://code.google.com/p/boto/
Reading https://github.com/boto/boto/
Reading https://github.com/boto/boto
Reading http://code.google.com/p/boto
Best match: boto 2.5.2
Downloading http://boto.googlecode.com/files/boto-2.5.2.tar.gz
Processing boto-2.5.2.tar.gz
Running boto-2.5.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-kUcOvA/boto-2.5.2/egg-dist-tmp-Ajphxz
warning: no files found matching 'boto/mturk/test/*.doctest'
warning: no files found matching 'boto/mturk/test/.gitignore'
^[[Bzip_safe flag not set; analyzing archive contents...
boto.connection: module references __file__
Adding boto 2.5.2 to easy-install.pth file
Installing route53 script to /usr/local/bin
Installing fetch_file script to /usr/local/bin
Installing taskadmin script to /usr/local/bin
Installing sdbadmin script to /usr/local/bin
Installing instance_events script to /usr/local/bin
Installing launch_instance script to /usr/local/bin
Installing s3put script to /usr/local/bin
Installing s3multiput script to /usr/local/bin
Installing lss3 script to /usr/local/bin
Installing cfadmin script to /usr/local/bin
Installing kill_instance script to /usr/local/bin
Installing bundle_image script to /usr/local/bin
Installing pyami_sendmail script to /usr/local/bin
Installing elbadmin script to /usr/local/bin
Installing asadmin script to /usr/local/bin
Installing list_instances script to /usr/local/bin
Installing cwutil script to /usr/local/bin
Installing cq script to /usr/local/bin

Installed /usr/local/lib/python2.7/dist-packages/boto-2.5.2-py2.7.egg
Searching for cmd2
Reading http://pypi.python.org/simple/cmd2/
Reading http://www.assembla.com/wiki/show/python-cmd2
Reading https://sourceforge.net/projects/python-cmd2
Reading http://packages.python.org/cmd2/
Reading http://catherine.devlin.googlepages.com/cmd2.html
Best match: cmd2 0.6.4
Downloading http://pypi.python.org/packages/2.7/c/cmd2/cmd2-0.6.4-py2.7.egg#md5=de8ca6cbdd3d5d06385c0364413e5072
Processing cmd2-0.6.4-py2.7.egg
Moving cmd2-0.6.4-py2.7.egg to /usr/local/lib/python2.7/dist-packages
Adding cmd2 0.6.4 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/cmd2-0.6.4-py2.7.egg
Searching for PrettyTable
Reading http://pypi.python.org/simple/PrettyTable/
Reading http://code.google.com/p/prettytable/
Reading http://luke.maurits.id.au/software/prettytable/
Best match: prettytable 0.6.1
Downloading http://pypi.python.org/packages/source/P/PrettyTable/prettytable-0.6.1.zip#md5=2ac002f4f944f9468b0df8b4de9e8967
Processing prettytable-0.6.1.zip
Running prettytable-0.6.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-9wVvif/prettytable-0.6.1/egg-dist-tmp-aIj3mN
zip_safe flag not set; analyzing archive contents...
Adding prettytable 0.6.1 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/prettytable-0.6.1-py2.7.egg
Searching for distribute
Reading http://pypi.python.org/simple/distribute/
Reading http://packages.python.org/distribute
Best match: distribute 0.6.28
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.28.tar.gz#md5=b400b532e33f78551e6847c1f5965e56
Processing distribute-0.6.28.tar.gz
Running distribute-0.6.28/setup.py -q bdist_egg --dist-dir /tmp/easy_install-z90Bgk/distribute-0.6.28/egg-dist-tmp-V6OQhE
Before install bootstrap.
Scanning installed packages
Setuptools installation detected at /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg
Egg installation
Patching...
Renaming /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg into /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg.OLD.1346191729.24
Patched done.
Relaunching...
Before install bootstrap.
Scanning installed packages
Setuptools installation detected at /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg
Egg installation
Already patched.
After install bootstrap.
Don't have permissions to write /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg-info, skipping
Creating /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg-info
Creating /usr/local/lib/python2.7/dist-packages/setuptools.pth
Moving distribute-0.6.28-py2.7.egg to /usr/local/lib/python2.7/dist-packages
Adding distribute 0.6.28 to easy-install.pth file
Installing easy_install script to /usr/local/bin
Installing easy_install-2.7 script to /usr/local/bin

Installed /usr/local/lib/python2.7/dist-packages/distribute-0.6.28-py2.7.egg
Searching for pyparsing>=1.5.6
Reading http://pypi.python.org/simple/pyparsing/
Reading http://pyparsing.wikispaces.com/
Reading http://sourceforge.net/project/showfiles.php?group_id=97203
Reading http://pyparsing.sourceforge.net/
Reading http://sourceforge.net/projects/pyparsing
Best match: pyparsing 1.5.6
Downloading http://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.6.zip#md5=5404de54e6d0ae71ce354d8db3576ac1
Processing pyparsing-1.5.6.zip
Running pyparsing-1.5.6/setup.py -q bdist_egg --dist-dir /tmp/easy_install-rCkw_N/pyparsing-1.5.6/egg-dist-tmp-fE3x4U
Traceback (most recent call last):
  File "setup.py", line 44, in <module>
    zip_safe=False,
  File "/usr/lib/python2.7/distutils/core.py", line 152, in setup
    dist.run_commands()
  File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
    cmd_obj.run()
  File "build/bdist.linux-x86_64/egg/setuptools/command/install.py", line 76, in run
  File "build/bdist.linux-x86_64/egg/setuptools/command/install.py", line 104, in do_egg_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 211, in run
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 427, in easy_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 478, in install_item
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 519, in process_distribution
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 563, in resolve
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 799, in best_match
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 811, in obtain
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 446, in easy_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 476, in install_item
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 655, in install_eggs
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 930, in build_and_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py", line 919, in run_setup
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 62, in run_setup
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 105, in run
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 64, in <lambda>
  File "setup.py", line 54, in <module>

  File "/usr/lib/python2.7/distutils/core.py", line 112, in setup
    _setup_distribution = dist = klass(attrs)
  File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 261, in __init__
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 476, in iter_entry_points
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2229, in get_entry_map
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2034, in parse_map
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2560, in split_sections
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 1854, in yield_lines
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 2163, in _get_metadata
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 1181, in get_metadata_lines
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 1178, in get_metadata
  File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 1238, in _get
zipimport.ZipImportError: bad local file header in /usr/local/lib/python2.7/dist-packages/setuptools-0.6c11-py2.7.egg

Then I edit setup.py and comment out zip_safe=False and run python setup.py install again, and it works fine:

vagrant@precise64:/vagrant$ sudo python setup.py install
running install
Checking .pth file support in /usr/local/lib/python2.7/dist-packages/
/usr/bin/python -E -c pass
TEST PASSED: /usr/local/lib/python2.7/dist-packages/ appears to support .pth files
running bdist_egg
running egg_info
writing requirements to brainstorm.egg-info/requires.txt
writing brainstorm.egg-info/PKG-INFO
writing namespace_packages to brainstorm.egg-info/namespace_packages.txt
writing top-level names to brainstorm.egg-info/top_level.txt
writing dependency_links to brainstorm.egg-info/dependency_links.txt
writing entry points to brainstorm.egg-info/entry_points.txt
reading manifest file 'brainstorm.egg-info/SOURCES.txt'
writing manifest file 'brainstorm.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/__init__.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/main.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/manipulator.py -> build/bdist.linux-x86_64/egg/brainstorm
copying build/lib.linux-x86_64-2.7/brainstorm/viewer.py -> build/bdist.linux-x86_64/egg/brainstorm
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/main.py to main.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/manipulator.py to manipulator.pyc
byte-compiling build/bdist.linux-x86_64/egg/brainstorm/viewer.py to viewer.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/namespace_packages.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying brainstorm.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating 'dist/brainstorm-0.1-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing brainstorm-0.1-py2.7.egg
removing '/usr/local/lib/python2.7/dist-packages/brainstorm-0.1-py2.7.egg' (and everything under it)
creating /usr/local/lib/python2.7/dist-packages/brainstorm-0.1-py2.7.egg
Extracting brainstorm-0.1-py2.7.egg to /usr/local/lib/python2.7/dist-packages
brainstorm 0.1 is already the active version in easy-install.pth
Installing brainstorm script to /usr/local/bin

Installed /usr/local/lib/python2.7/dist-packages/brainstorm-0.1-py2.7.egg
Processing dependencies for brainstorm==0.1
Searching for pyparsing>=1.5.6
Reading http://pypi.python.org/simple/pyparsing/
Reading http://pyparsing.wikispaces.com/
Reading http://sourceforge.net/project/showfiles.php?group_id=97203
Reading http://pyparsing.sourceforge.net/
Reading http://sourceforge.net/projects/pyparsing
Best match: pyparsing 1.5.6
Downloading http://pypi.python.org/packages/source/p/pyparsing/pyparsing-1.5.6.zip#md5=5404de54e6d0ae71ce354d8db3576ac1
Processing pyparsing-1.5.6.zip
Writing /tmp/easy_install-nIYyrH/pyparsing-1.5.6/setup.cfg
Running pyparsing-1.5.6/setup.py -q bdist_egg --dist-dir /tmp/easy_install-nIYyrH/pyparsing-1.5.6/egg-dist-tmp-0rGnXn
zip_safe flag not set; analyzing archive contents...
pyparsing: module MAY be using inspect.stack
Adding pyparsing 1.5.6 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/pyparsing-1.5.6-py2.7.egg
Searching for cliff==1.1.2
Best match: cliff 1.1.2
Processing cliff-1.1.2-py2.7.egg
cliff 1.1.2 is already the active version in easy-install.pth

Using /usr/local/lib/python2.7/dist-packages/cliff-1.1.2-py2.7.egg
Searching for boto==2.5.2
Best match: boto 2.5.2
Processing boto-2.5.2-py2.7.egg
boto 2.5.2 is already the active version in easy-install.pth
Installing route53 script to /usr/local/bin
Installing fetch_file script to /usr/local/bin
Installing taskadmin script to /usr/local/bin
Installing sdbadmin script to /usr/local/bin
Installing instance_events script to /usr/local/bin
Installing launch_instance script to /usr/local/bin
Installing s3put script to /usr/local/bin
Installing s3multiput script to /usr/local/bin
Installing lss3 script to /usr/local/bin
Installing cfadmin script to /usr/local/bin
Installing kill_instance script to /usr/local/bin
Installing bundle_image script to /usr/local/bin
Installing pyami_sendmail script to /usr/local/bin
Installing elbadmin script to /usr/local/bin
Installing asadmin script to /usr/local/bin
Installing list_instances script to /usr/local/bin
Installing cwutil script to /usr/local/bin
Installing cq script to /usr/local/bin

Using /usr/local/lib/python2.7/dist-packages/boto-2.5.2-py2.7.egg
Searching for cmd2==0.6.4
Best match: cmd2 0.6.4
Processing cmd2-0.6.4-py2.7.egg
cmd2 0.6.4 is already the active version in easy-install.pth

Using /usr/local/lib/python2.7/dist-packages/cmd2-0.6.4-py2.7.egg
Searching for prettytable==0.6.1
Best match: prettytable 0.6.1
Processing prettytable-0.6.1-py2.7.egg
prettytable 0.6.1 is already the active version in easy-install.pth

Using /usr/local/lib/python2.7/dist-packages/prettytable-0.6.1-py2.7.egg
Searching for distribute==0.6.28
Best match: distribute 0.6.28
Processing distribute-0.6.28-py2.7.egg
distribute 0.6.28 is already the active version in easy-install.pth
Installing easy_install script to /usr/local/bin
Installing easy_install-2.7 script to /usr/local/bin

Using /usr/local/lib/python2.7/dist-packages/distribute-0.6.28-py2.7.egg
Finished processing dependencies for brainstorm==0.1

Expected Results

For the installation script to work the first time without modifications.

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