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knapsack2rdf

Retrieve Pubmed ID

ruby knapsack2reference.rb knapsack-references-uniq-20210823 > knapsack-references-uniq-20210823.pmid

Convert to RDF

KNApSAcK Core

  • input
    • 有田先生用_20210806/id_data.dat
    • 有田先生用_20210806/in_chi_key.dat
    • 有田先生用_20210806/cas_id.dat
    • 有田先生用_20210806/start_substance.dat
    • 有田先生用_20210806/smiles_inchi.dat
    • 有田先生用_20210806/family_kingdom.dat
    • knapsack-references-uniq-20210823.pmid
    • knapsack_mw-tmp.txt.gz
    • knapsack_20210806_id_data.tsv
ruby knapsack2rdf.rb > rdf/knapsack-core.ttl

#ruby knapsack2rdf.rb C00000001 > C00000001.ttl
#ruby knapsack2rdf.rb C00000091 > C00000091.ttl

KNApSAcK Natural Activity

ruby knapsack_na2rdf.rb  > rdf/kanapsac_na.ttl
rapper -g -o turtle rdf/kanapsac_na.ttl > rdf/dev/kanapsac_na.ttl

KNApSAcK MetaboLite Activity

ruby knapsack_ma2rdf.rb  > rdf/kanapsac_ma.ttl

mb_knapsack's People

Contributors

tfuji avatar yayamamo avatar kushidat avatar

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