kushidat / iobc

Interlinking Ontology for Biological Concepts (IOBC) homepage

Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE of BioPortal (http://purl.bioontology.org/ontology/IOBC). The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: "Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International".

iobc's Issues

There are 3096 unsatisfiable classes in IOBC

I ran the HermiT reasoner on IOBC and it identified over 3000 unsatisfiable classes. The attached Excel file contains each of them.

iobc_unsatisfiable_classes.xlsx

ycf1 gene not available in the ontology

Hello,

I am currently working on a DNA barcoding project. I have noticed that your ontology covers some of our needs due to its very good classification of genes. Unfortunately it doesn't have one of the most important chloroplast gene for DNA Barcoding the ycf1. It could be very easy to insert because it is at the same level of matK gene or rbcL gene.

Thank you very much.