kunju-pitt Goto Github PK

allenricher

A comprehensive gene set function enrichment tool for multiple species.

aml_classifer

Code and figures of the manuscript by Warnat-Herresthal et al 2019

anaconda-issues

Anaconda issue tracking

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

autoannotateapp

AutoAnnotate Cytoscape App

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbiornaseq

Quality control and differential expression for bcbio RNA-seq experiments.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bingo

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

bookdown

Authoring Books and Technical Documents with R Markdown

candidakoanalysis

Analysis of gene KO in Candida albicans using CRISPR

cgdsr

R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)

chinaweather

China Weather Project for R

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

circompara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

cobasi

conda

OS-agnostic, system-level binary package manager and ecosystem

consexpression

Tool for RNA-Seq analysis.

contributions

Contribute Packages to Bioconductor

course_rna-seq2015

course_rna-seq2018

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cytoscape

Cytoscape: an open source platform for network analysis and visualization

cytoscape-automation

Collection of scripts that include programmatic io and control of Cytoscape

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

cytoscape_workflows

collection of notebooks with different cytoscape workflows

dbug

notes and materials from dbug meetings

dchipio

🔬 R package: dChipIO [DORMANT]

ddir

An R package to access to Omics Discovery Index API